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US20250289799, Example 150

E3L041189
Internal ID: BDB041189
Activity data available Local docking-ready structure
Dock with Q8TAF3
Structure
/e3_file/ligand_db/generated/BDB041189/BDB041189.sdf
Basic Properties
Compound ID
E3L041189
Internal ID
BDB041189
Molecular formula
C28H31F3N6O
Molecular weight
524.591000
Exact mass
524.251144
XLogP
7.0935
TPSA
81.6600
HBA / HBD
6 / 1
Rotatable bonds
6
Heavy atoms / rings
38 / 7
Activity summary
IC50 unknown 431.00000000 nM
1 activity record(s) imported
InChIKey
CZHWCACKZIFZER-UHFFFAOYSA-N
SMILES
Cc1ncn(C(C)C)c1-c1nc(NCC23CCC(c4ccc(C(F)(F)F)cn4)(CC2)CC3)c2occc2n1
Aliases
BDBM771990 (preferred) US20250289799, Example 150 (source_name) BDBM771990 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q8TAF3 WDR48;KIAA1449;UAF1
WD repeat-containing protein 48
reported_binder bindingdb_reported Yes No low BindingDB:BDBM771990 medium
; target=Ubiquitin carboxyl-terminal hydrolase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM771990 Open - 10.7270/Q2KS6X99
PubChem CID176244161 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1ncn(C(C)C)c1-c1nc(NCC23CCC(c4ccc(C(F)(F)F)cn4)(CC2)CC3)c2occc2n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB041189/BDB041189.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB041189/BDB041189.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB041189/BDB041189.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB041189/BDB041189.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB041189/BDB041189.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Ubiquitin carboxyl-terminal hydrolase 1
Q8TAF3
E3 ligase component
BindingDB:BDBM771990 IC50 431 nM Moderate DOI: 10.7270/Q2KS6X99 1