< Back to small molecule database

US20250289799, Example 160

E3L041199
Internal ID: BDB041199
Activity data available Local docking-ready structure
Dock with Q8TAF3
Structure
/e3_file/ligand_db/generated/BDB041199/BDB041199.sdf
Basic Properties
Compound ID
E3L041199
Internal ID
BDB041199
Molecular formula
C25H25F3N6O
Molecular weight
482.510000
Exact mass
482.204194
XLogP
5.3432
TPSA
68.1000
HBA / HBD
6 / 1
Rotatable bonds
7
Heavy atoms / rings
35 / 4
Activity summary
IC50 unknown 3.60000000 nM
1 activity record(s) imported
InChIKey
WNBNCBHVOIXVLM-UHFFFAOYSA-N
SMILES
COc1cnc(-c2ccccc2N(C)C)nc1NCc1ccc(-n2nc(C(F)(F)F)cc2C)cc1
Aliases
BDBM772000 (preferred) US20250289799, Example 160 (source_name) BDBM772000 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q8TAF3 WDR48;KIAA1449;UAF1
WD repeat-containing protein 48		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM772000 medium
; target=Ubiquitin carboxyl-terminal hydrolase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM772000 Open - 10.7270/Q2KS6X99
PubChem CID176244245 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1cnc(-c2ccccc2N(C)C)nc1NCc1ccc(-n2nc(C(F)(F)F)cc2C)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB041199/BDB041199.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB041199/BDB041199.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB041199/BDB041199.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB041199/BDB041199.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB041199/BDB041199.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Ubiquitin carboxyl-terminal hydrolase 1
Q8TAF3
E3 ligase component 		BindingDB:BDBM772000 IC50 3.6 nM Very high DOI: 10.7270/Q2KS6X99 1