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US20250289799, Example 166

E3L041205
Internal ID: BDB041205
Activity data available Local docking-ready structure
Dock with Q8TAF3
Structure
/e3_file/ligand_db/generated/BDB041205/BDB041205.sdf
Basic Properties
Compound ID
E3L041205
Internal ID
BDB041205
Molecular formula
C24H21ClN6O
Molecular weight
444.926000
Exact mass
444.146537
XLogP
5.9947
TPSA
81.6600
HBA / HBD
6 / 1
Rotatable bonds
6
Heavy atoms / rings
32 / 5
Activity summary
IC50 unknown 2.10000000 nM
1 activity record(s) imported
InChIKey
RKHYTOSBSABWAI-UHFFFAOYSA-N
SMILES
CC(C)n1ncc(Cl)c1-c1nc(NCc2ccc(-c3ccccn3)cc2)c2occc2n1
Aliases
BDBM772006 (preferred) US20250289799, Example 166 (source_name) BDBM772006 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q8TAF3 WDR48;KIAA1449;UAF1
WD repeat-containing protein 48		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM772006 medium
; target=Ubiquitin carboxyl-terminal hydrolase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM772006 Open - 10.7270/Q2KS6X99
PubChem CID176244218 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)n1ncc(Cl)c1-c1nc(NCc2ccc(-c3ccccn3)cc2)c2occc2n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB041205/BDB041205.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB041205/BDB041205.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB041205/BDB041205.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB041205/BDB041205.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB041205/BDB041205.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Ubiquitin carboxyl-terminal hydrolase 1
Q8TAF3
E3 ligase component 		BindingDB:BDBM772006 IC50 2.1 nM Very high DOI: 10.7270/Q2KS6X99 1