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US20250289799, Example 167

E3L041206
Internal ID: BDB041206
Activity data available Local docking-ready structure
Dock with Q8TAF3
Structure
/e3_file/ligand_db/generated/BDB041206/BDB041206.sdf
Basic Properties
Compound ID
E3L041206
Internal ID
BDB041206
Molecular formula
C24H21ClF3N7O
Molecular weight
515.927000
Exact mass
515.144821
XLogP
6.3520
TPSA
86.5900
HBA / HBD
6 / 1
Rotatable bonds
6
Heavy atoms / rings
36 / 5
Activity summary
IC50 unknown 0.45000000 nM
1 activity record(s) imported
InChIKey
LSWVZMVHULIPJJ-UHFFFAOYSA-N
SMILES
CC(C)n1ncc(Cl)c1-c1nc(NCc2ccc(-c3nc(C(F)(F)F)cn3C)cc2)c2occc2n1
Aliases
BDBM772007 (preferred) US20250289799, Example 167 (source_name) BDBM772007 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q8TAF3 WDR48;KIAA1449;UAF1
WD repeat-containing protein 48		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM772007 medium
; target=Ubiquitin carboxyl-terminal hydrolase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM772007 Open - 10.7270/Q2KS6X99
PubChem CID176244231 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)n1ncc(Cl)c1-c1nc(NCc2ccc(-c3nc(C(F)(F)F)cn3C)cc2)c2occc2n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB041206/BDB041206.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB041206/BDB041206.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB041206/BDB041206.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB041206/BDB041206.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB041206/BDB041206.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Ubiquitin carboxyl-terminal hydrolase 1
Q8TAF3
E3 ligase component 		BindingDB:BDBM772007 IC50 0.45 nM Very high DOI: 10.7270/Q2KS6X99 1