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US20250289799, Example 209

E3L041247
Internal ID: BDB041247
Activity data available Local docking-ready structure
Dock with Q8TAF3
Structure
/e3_file/ligand_db/generated/BDB041247/BDB041247.sdf
Basic Properties
Compound ID
E3L041247
Internal ID
BDB041247
Molecular formula
C24H29ClF3N7O2
Molecular weight
539.990000
Exact mass
539.202336
XLogP
5.2333
TPSA
91.9100
HBA / HBD
7 / 1
Rotatable bonds
7
Heavy atoms / rings
37 / 6
Activity summary
IC50 unknown 1.60000000 nM
1 activity record(s) imported
InChIKey
SFCQOUXIEJQNNJ-UHFFFAOYSA-N
SMILES
COc1cnc(-c2c(Cl)cnn2C(C)C)nc1NCC12CCC(c3nc(C(F)(F)F)cn3C)(CC1)OC2
Aliases
BDBM772048 (preferred) US20250289799, Example 209 (source_name) BDBM772048 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q8TAF3 WDR48;KIAA1449;UAF1
WD repeat-containing protein 48		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM772048 medium
; target=Ubiquitin carboxyl-terminal hydrolase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM772048 Open - 10.7270/Q2KS6X99
PubChem CID175907410 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1cnc(-c2c(Cl)cnn2C(C)C)nc1NCC12CCC(c3nc(C(F)(F)F)cn3C)(CC1)OC2 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB041247/BDB041247.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB041247/BDB041247.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB041247/BDB041247.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB041247/BDB041247.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB041247/BDB041247.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Ubiquitin carboxyl-terminal hydrolase 1
Q8TAF3
E3 ligase component 		BindingDB:BDBM772048 IC50 1.6 nM Very high DOI: 10.7270/Q2KS6X99 1