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US12421228, Example 21

E3L041306
Internal ID: BDB041306
Activity data available Local docking-ready structure
Dock with O75530 Dock with Q09028
Structure
/e3_file/ligand_db/generated/BDB041306/BDB041306.sdf
Basic Properties
Compound ID
E3L041306
Internal ID
BDB041306
Molecular formula
C24H22FN5O
Molecular weight
415.472000
Exact mass
415.180839
XLogP
4.0973
TPSA
71.9600
HBA / HBD
6 / 2
Rotatable bonds
6
Heavy atoms / rings
31 / 5
Activity summary
IC50 unknown 175.00000000 nM
2 activity record(s) imported
InChIKey
RJLWUEYCXCBJSN-UHFFFAOYSA-N
SMILES
CNCc1ccc(-c2cnc(NCc3c(F)ccc4c3CCO4)c3cnncc23)cc1
Aliases
BDBM773549 (preferred) US12421228, Example 21 (source_name) BDBM773549 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O75530 EED
Polycomb protein EED		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM773549 medium
; target=Histone-lysine N-methyltransferase EZH2
Q09028 RBBP4;RBAP48
Histone-binding protein RBBP4		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM773549 medium
; target=Histone-lysine N-methyltransferase EZH2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM773549 Open - 10.7270/Q2NK3KVR
PubChem CID155235318 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CNCc1ccc(-c2cnc(NCc3c(F)ccc4c3CCO4)c3cnncc23)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB041306/BDB041306.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB041306/BDB041306.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB041306/BDB041306.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB041306/BDB041306.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB041306/BDB041306.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase EZH2
O75530
E3 ligase component 		BindingDB:BDBM773549 IC50 175 nM Moderate DOI: 10.7270/Q2NK3KVR 1
Histone-lysine N-methyltransferase EZH2
Q09028
E3 ligase component 		BindingDB:BDBM773549 IC50 175 nM Moderate DOI: 10.7270/Q2NK3KVR 1