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US12421228, Example 44

E3L041328
Internal ID: BDB041328
Activity data available Local docking-ready structure
Dock with O75530 Dock with Q09028
Structure
/e3_file/ligand_db/generated/BDB041328/BDB041328.sdf
Basic Properties
Compound ID
E3L041328
Internal ID
BDB041328
Molecular formula
C26H29FN6O2
Molecular weight
476.556000
Exact mass
476.233602
XLogP
3.9652
TPSA
77.3300
HBA / HBD
7 / 1
Rotatable bonds
8
Heavy atoms / rings
35 / 5
Activity summary
IC50 > 250.00000000 nM
2 activity record(s) imported
InChIKey
CVMHGVSLEFSBJR-UHFFFAOYSA-N
SMILES
Cc1cc(-c2cnc(NCc3c(F)ccc4c3CCO4)c3cnc(OCCN(C)C)cc23)n(C)n1
Aliases
BDBM773571 (preferred) US12421228, Example 44 (source_name) BDBM773571 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O75530 EED
Polycomb protein EED		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM773571 medium
; target=Histone-lysine N-methyltransferase EZH2
Q09028 RBBP4;RBAP48
Histone-binding protein RBBP4		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM773571 medium
; target=Histone-lysine N-methyltransferase EZH2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM773571 Open - 10.7270/Q2NK3KVR
PubChem CID155240332 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cc(-c2cnc(NCc3c(F)ccc4c3CCO4)c3cnc(OCCN(C)C)cc23)n(C)n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB041328/BDB041328.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB041328/BDB041328.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB041328/BDB041328.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB041328/BDB041328.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB041328/BDB041328.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Histone-lysine N-methyltransferase EZH2
Q09028
E3 ligase component 		BindingDB:BDBM773571 IC50 >250 nM Uncertain DOI: 10.7270/Q2NK3KVR 1
Histone-lysine N-methyltransferase EZH2
O75530
E3 ligase component 		BindingDB:BDBM773571 IC50 >250 nM Uncertain DOI: 10.7270/Q2NK3KVR 1