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BDBM775514

E3L041900
Internal ID: BDB041900
Activity data available Local docking-ready structure
Dock with Q96GG9
Structure
/e3_file/ligand_db/generated/BDB041900/BDB041900.sdf
Basic Properties
Compound ID
E3L041900
Internal ID
BDB041900
Molecular formula
C39H44N8O4
Molecular weight
688.833000
Exact mass
688.348552
XLogP
4.0785
TPSA
117.8300
HBA / HBD
7 / 1
Rotatable bonds
11
Heavy atoms / rings
51 / 8
Activity summary
IC50 unknown 600.00000000 nM
2 activity record(s) imported
InChIKey
PYNDYTZHXUCARN-FFRVVHRYSA-N
SMILES
C=C(C(=O)N(C)Cc1cccc([C@@H]2c3cnn(-c4ccccc4)c3N(CC)C(=O)[C@H]2NC(=O)c2ccn(C3CC3)n2)c1)C(C)N1CCC12COC2
Aliases
BDBM775514 (preferred) BDBM775514 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96GG9 DCUN1D1;DCN1;DCUN1L1;RP42;SCCRO
DCN1-like protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM775514 medium
; target=DCN1-like protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM775514 Open - 10.7270/Q25D8XN1
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready C=C(C(=O)N(C)Cc1cccc([C@@H]2c3cnn(-c4ccccc4)c3N(CC)C(=O)[C@H]2NC(=O)c2ccn(C3CC3)n2)c1)C(C)N1CCC12COC2 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB041900/BDB041900.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB041900/BDB041900.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB041900/BDB041900.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB041900/BDB041900.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB041900/BDB041900.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM775514 IC50 2000 nM Low DOI: 10.7270/Q25D8XN1 1
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM775514 IC50 600 nM Moderate DOI: 10.7270/Q25D8XN1 1