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US12441708, Example 3

E3L041945
Internal ID: BDB041945
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB041945/BDB041945.sdf
Basic Properties
Compound ID
E3L041945
Internal ID
BDB041945
Molecular formula
C19H22FN3O5
Molecular weight
391.399000
Exact mass
391.154349
XLogP
1.1915
TPSA
115.8100
HBA / HBD
6 / 3
Rotatable bonds
8
Heavy atoms / rings
28 / 3
Activity summary
Kd unknown 55000.00000000 nM
1 activity record(s) imported
InChIKey
PDGVSEJPKBQWBQ-UHFFFAOYSA-N
SMILES
O=C1CCC(N2C(=O)c3cc(F)c(NCCCCCCO)cc3C2=O)C(=O)N1
Aliases
BDBM777349 (preferred) US12441708, Example 3 (source_name) BDBM777349 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM777349 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM777349 Open - 10.7270/Q2TX3M4R
PubChem CID135273262 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(N2C(=O)c3cc(F)c(NCCCCCCO)cc3C2=O)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB041945/BDB041945.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB041945/BDB041945.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB041945/BDB041945.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB041945/BDB041945.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB041945/BDB041945.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM777349 Kd 55000 nM Low DOI: 10.7270/Q2TX3M4R 1