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US12441708, Example 5

E3L041947
Internal ID: BDB041947
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB041947/BDB041947.sdf
Basic Properties
Compound ID
E3L041947
Internal ID
BDB041947
Molecular formula
C19H24FN3O4
Molecular weight
377.416000
Exact mass
377.175084
XLogP
1.5513
TPSA
98.7400
HBA / HBD
5 / 3
Rotatable bonds
8
Heavy atoms / rings
27 / 3
Activity summary
Kd unknown 55000.00000000 nM
1 activity record(s) imported
InChIKey
JHKFPFWDHAMTFN-UHFFFAOYSA-N
SMILES
O=C1CCC(N2Cc3cc(NCCCCCCO)c(F)cc3C2=O)C(=O)N1
Aliases
BDBM777351 (preferred) US12441708, Example 5 (source_name) BDBM777351 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM777351 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM777351 Open - 10.7270/Q2TX3M4R
PubChem CID134414452 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(N2Cc3cc(NCCCCCCO)c(F)cc3C2=O)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB041947/BDB041947.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB041947/BDB041947.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB041947/BDB041947.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB041947/BDB041947.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB041947/BDB041947.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM777351 Kd 55000 nM Low DOI: 10.7270/Q2TX3M4R 1