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US12441708, Example 25

E3L041961
Internal ID: BDB041961
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB041961/BDB041961.sdf
Basic Properties
Compound ID
E3L041961
Internal ID
BDB041961
Molecular formula
C12H9N3O4
Molecular weight
259.221000
Exact mass
259.059306
XLogP
-0.5094
TPSA
95.5800
HBA / HBD
4 / 2
Rotatable bonds
1
Heavy atoms / rings
19 / 3
Activity summary
Kd > 100000.00000000 nM
1 activity record(s) imported
InChIKey
SSKPOPMQEPMDJT-UHFFFAOYSA-N
SMILES
O=C1NCC(N2C(=O)c3ccccc3C2=O)C(=O)N1
Aliases
BDBM777371 (preferred) US12441708, Example 25 (source_name) BDBM777371 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM777371 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM777371 Open - 10.7270/Q2TX3M4R
PubChem CID78176832 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1NCC(N2C(=O)c3ccccc3C2=O)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB041961/BDB041961.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB041961/BDB041961.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB041961/BDB041961.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB041961/BDB041961.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB041961/BDB041961.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM777371 Kd >100000 nM Low DOI: 10.7270/Q2TX3M4R 1