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US12441708, Example 29

E3L041964
Internal ID: BDB041964
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB041964/BDB041964.sdf
Basic Properties
Compound ID
E3L041964
Internal ID
BDB041964
Molecular formula
C11H13N3O4
Molecular weight
251.242000
Exact mass
251.090606
XLogP
-0.3803
TPSA
90.2900
HBA / HBD
5 / 1
Rotatable bonds
3
Heavy atoms / rings
18 / 2
Activity summary
Kd unknown 55000.00000000 nM
1 activity record(s) imported
InChIKey
FDSSSFSXMKVKBF-UHFFFAOYSA-N
SMILES
CCOc1cc(=O)n(C2CCC(=O)NC2=O)cn1
Aliases
BDBM777375 (preferred) US12441708, Example 29 (source_name) BDBM777375 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon
reported_binder bindingdb_reported Yes No low BindingDB:BDBM777375 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM777375 Open - 10.7270/Q2TX3M4R
PubChem CID135279004 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCOc1cc(=O)n(C2CCC(=O)NC2=O)cn1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB041964/BDB041964.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB041964/BDB041964.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB041964/BDB041964.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB041964/BDB041964.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB041964/BDB041964.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component
BindingDB:BDBM777375 Kd 55000 nM Low DOI: 10.7270/Q2TX3M4R 1