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BDBM781594

E3L041980
Internal ID: BDB041980
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB041980/BDB041980.sdf
Basic Properties
Compound ID
E3L041980
Internal ID
BDB041980
Molecular formula
C32H31FN4O3
Molecular weight
538.623000
Exact mass
538.238019
XLogP
3.6348
TPSA
72.9600
HBA / HBD
5 / 1
Rotatable bonds
6
Heavy atoms / rings
40 / 7
Activity summary
IC50 < 500.00000000 nM
1 activity record(s) imported
InChIKey
KEOJTRAPPNIXIL-AMWOSJAMSA-N
SMILES
O=C1CCC(N2Cc3cc(CN4C[C@@H]5C[C@H]4CN5C(c4ccccc4)c4ccccc4)c(F)cc3C2=O)C(=O)N1
Aliases
BDBM781594 (preferred) 3-(5-(((1S,4S)-5-benzhydryl-2,5-diazabicyclo[2.2.1]heptan-2-yl)methyl)-6-fluoro-1-oxoisoindolin-2-yl)piperidine-2,6-dione (source_name) BDBM781594 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM781594 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM781594 Open - 10.7270/Q2HH6QVM
PubChem CID171829297 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(N2Cc3cc(CN4C[C@@H]5C[C@H]4CN5C(c4ccccc4)c4ccccc4)c(F)cc3C2=O)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB041980/BDB041980.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB041980/BDB041980.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB041980/BDB041980.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB041980/BDB041980.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB041980/BDB041980.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM781594 IC50 <500 nM Uncertain DOI: 10.7270/Q2HH6QVM 1