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BDBM781640

E3L042026
Internal ID: BDB042026
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB042026/BDB042026.sdf
Basic Properties
Compound ID
E3L042026
Internal ID
BDB042026
Molecular formula
C33H34N4O4
Molecular weight
550.659000
Exact mass
550.258006
XLogP
3.7736
TPSA
90.0300
HBA / HBD
5 / 1
Rotatable bonds
5
Heavy atoms / rings
41 / 6
Activity summary
IC50 unknown 750.00000000 nM
1 activity record(s) imported
InChIKey
ZPRNZQSDAHNNKK-UHFFFAOYSA-N
SMILES
CC1(C)CN(C(=O)c2ccc3c(c2)CN(C2CCC(=O)NC2=O)C3=O)CCN1C(c1ccccc1)c1ccccc1
Aliases
BDBM781640 (preferred) 3-(5-(4-Benzhydryl-3,3-dimethylpiperazine-1-carbonyl)-1-oxoisoindolin-2-yl)piperidine-2,6-dione (source_name) BDBM781640 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM781640 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM781640 Open - 10.7270/Q2HH6QVM
PubChem CID171829306 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC1(C)CN(C(=O)c2ccc3c(c2)CN(C2CCC(=O)NC2=O)C3=O)CCN1C(c1ccccc1)c1ccccc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB042026/BDB042026.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB042026/BDB042026.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB042026/BDB042026.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB042026/BDB042026.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB042026/BDB042026.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM781640 IC50 750 nM Moderate DOI: 10.7270/Q2HH6QVM 1