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BDBM781645

E3L042031
Internal ID: BDB042031
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB042031/BDB042031.sdf
Basic Properties
Compound ID
E3L042031
Internal ID
BDB042031
Molecular formula
C31H31N3O3
Molecular weight
493.607000
Exact mass
493.236542
XLogP
4.4166
TPSA
69.7200
HBA / HBD
4 / 1
Rotatable bonds
5
Heavy atoms / rings
37 / 6
Activity summary
IC50 unknown 750.00000000 nM
1 activity record(s) imported
InChIKey
OUCYWLPVPHRVBU-UHFFFAOYSA-N
SMILES
O=C1CCC(N2Cc3cc(C4CCN(C(c5ccccc5)c5ccccc5)CC4)ccc3C2=O)C(=O)N1
Aliases
BDBM781645 (preferred) 3-(5-(1-Benzhydrylpiperidin-4-yl)-1-oxoisoindolin-2-yl)piperidine-2,6-dione (source_name) BDBM781645 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM781645 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM781645 Open - 10.7270/Q2HH6QVM
PubChem CID171829215 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(N2Cc3cc(C4CCN(C(c5ccccc5)c5ccccc5)CC4)ccc3C2=O)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB042031/BDB042031.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB042031/BDB042031.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB042031/BDB042031.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB042031/BDB042031.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB042031/BDB042031.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM781645 IC50 750 nM Moderate DOI: 10.7270/Q2HH6QVM 1