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BDBM781656

E3L042042
Internal ID: BDB042042
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB042042/BDB042042.sdf
Basic Properties
Compound ID
E3L042042
Internal ID
BDB042042
Molecular formula
C30H29N5O4
Molecular weight
523.593000
Exact mass
523.221954
XLogP
2.3900
TPSA
102.9200
HBA / HBD
6 / 1
Rotatable bonds
5
Heavy atoms / rings
39 / 6
Activity summary
IC50 unknown 750.00000000 nM
1 activity record(s) imported
InChIKey
IJUMHRUWPMCZBF-UHFFFAOYSA-N
SMILES
O=C1CCC(N2Cc3c(C(=O)N4CCN(C(c5ccccc5)c5ccccn5)CC4)cccc3C2=O)C(=O)N1
Aliases
BDBM781656 (preferred) 3-(1-Oxo-4-(4-(phenyl(pyridin-2-yl)methyl)piperazine-1-carbonyl)isoindolin-2-yl)piperidine-2,6-dione (source_name) BDBM781656 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM781656 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM781656 Open - 10.7270/Q2HH6QVM
PubChem CID171829281 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(N2Cc3c(C(=O)N4CCN(C(c5ccccc5)c5ccccn5)CC4)cccc3C2=O)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB042042/BDB042042.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB042042/BDB042042.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB042042/BDB042042.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB042042/BDB042042.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB042042/BDB042042.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM781656 IC50 750 nM Moderate DOI: 10.7270/Q2HH6QVM 1