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BDBM781721

E3L042107
Internal ID: BDB042107
Activity data available Local docking-ready structure
Dock with Q96SW2
Structure
/e3_file/ligand_db/generated/BDB042107/BDB042107.sdf
Basic Properties
Compound ID
E3L042107
Internal ID
BDB042107
Molecular formula
C36H40N4O3
Molecular weight
576.741000
Exact mass
576.310041
XLogP
4.9152
TPSA
72.9600
HBA / HBD
5 / 1
Rotatable bonds
6
Heavy atoms / rings
43 / 7
Activity summary
IC50 unknown 750.00000000 nM
1 activity record(s) imported
InChIKey
JVPZKXVSTNZLEQ-UHFFFAOYSA-N
SMILES
O=C1CCC(N2Cc3cc(CN4CCC5(CC4)CCN(C(c4ccccc4)c4ccccc4)CC5)ccc3C2=O)C(=O)N1
Aliases
BDBM781721 (preferred) 3-(5-((9-Benzhydryl-3,9-diazaspiro[5.5]undecan-3-yl)methyl)-1-oxoisoindolin-2-yl)piperidine-2,6-dione (source_name) BDBM781721 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96SW2 CRBN;AD-006
Protein cereblon		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM781721 medium
; target=Protein cereblon
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM781721 Open - 10.7270/Q2HH6QVM
PubChem CID171828908 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C1CCC(N2Cc3cc(CN4CCC5(CC4)CCN(C(c4ccccc4)c4ccccc4)CC5)ccc3C2=O)C(=O)N1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB042107/BDB042107.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB042107/BDB042107.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB042107/BDB042107.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB042107/BDB042107.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB042107/BDB042107.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein cereblon
Q96SW2
E3 ligase component 		BindingDB:BDBM781721 IC50 750 nM Moderate DOI: 10.7270/Q2HH6QVM 1