< Back to small molecule database

US12459899, Example 242

E3L042457
Internal ID: BDB042457
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB042457/BDB042457.sdf
Basic Properties
Compound ID
E3L042457
Internal ID
BDB042457
Molecular formula
C21H20N6O2
Molecular weight
388.431000
Exact mass
388.164774
XLogP
1.4712
TPSA
105.9800
HBA / HBD
6 / 1
Rotatable bonds
4
Heavy atoms / rings
29 / 4
Activity summary
IC50 unknown 3.18000000 nM
1 activity record(s) imported
InChIKey
FLDGMZDBTWDQMN-UHFFFAOYSA-N
SMILES
N#Cc1ccc(N2CCN(C(=O)CCc3cc4ncccc4c(=O)[nH]3)CC2)nc1
Aliases
BDBM783846 (preferred) US12459899, Example 242 (source_name) BDBM783846 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1
reported_binder bindingdb_reported Yes No low BindingDB:BDBM783846 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM783846 Open - 10.7270/Q27W6J0N
PubChem CID156318047 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready N#Cc1ccc(N2CCN(C(=O)CCc3cc4ncccc4c(=O)[nH]3)CC2)nc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB042457/BDB042457.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB042457/BDB042457.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB042457/BDB042457.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB042457/BDB042457.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB042457/BDB042457.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component
BindingDB:BDBM783846 IC50 3.18 nM Very high DOI: 10.7270/Q27W6J0N 1