< Back to small molecule database

US12459899, Example 16

E3L042469
Internal ID: BDB042469
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB042469/BDB042469.sdf
Basic Properties
Compound ID
E3L042469
Internal ID
BDB042469
Molecular formula
C23H23F4N3O2
Molecular weight
449.448000
Exact mass
449.172640
XLogP
4.3206
TPSA
48.5700
HBA / HBD
4 / 1
Rotatable bonds
6
Heavy atoms / rings
32 / 4
Activity summary
IC50 < 1.00000000 nM
1 activity record(s) imported
InChIKey
GGUDJDQZAFTDCI-UHFFFAOYSA-N
SMILES
O=c1[nH]c(CCCN2CCN(c3cccc(OC(F)(F)F)c3)CC2)cc2ccc(F)cc12
Aliases
BDBM783927 (preferred) US12459899, Example 16 (source_name) BDBM783927 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1
reported_binder bindingdb_reported Yes No low BindingDB:BDBM783927 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM783927 Open - 10.7270/Q27W6J0N
PubChem CID156318943 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=c1[nH]c(CCCN2CCN(c3cccc(OC(F)(F)F)c3)CC2)cc2ccc(F)cc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB042469/BDB042469.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB042469/BDB042469.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB042469/BDB042469.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB042469/BDB042469.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB042469/BDB042469.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component
BindingDB:BDBM783927 IC50 <1 nM Very high DOI: 10.7270/Q27W6J0N 1