< Back to small molecule database

US12459899, Example 66

E3L042506
Internal ID: BDB042506
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB042506/BDB042506.sdf
Basic Properties
Compound ID
E3L042506
Internal ID
BDB042506
Molecular formula
C24H26FN3O2
Molecular weight
407.489000
Exact mass
407.200905
XLogP
3.3662
TPSA
56.4100
HBA / HBD
3 / 1
Rotatable bonds
5
Heavy atoms / rings
30 / 4
Activity summary
IC50 < 1.00000000 nM
1 activity record(s) imported
InChIKey
YDWCHAAHOUFZCX-UHFFFAOYSA-N
SMILES
Cc1ccc(F)c2c(=O)[nH]c(CCCN3CCN(C(=O)c4ccccc4)CC3)cc12
Aliases
BDBM783975 (preferred) US12459899, Example 66 (source_name) BDBM783975 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1
reported_binder bindingdb_reported Yes No low BindingDB:BDBM783975 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM783975 Open - 10.7270/Q27W6J0N
PubChem CID156318291 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1ccc(F)c2c(=O)[nH]c(CCCN3CCN(C(=O)c4ccccc4)CC3)cc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB042506/BDB042506.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB042506/BDB042506.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB042506/BDB042506.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB042506/BDB042506.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB042506/BDB042506.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component
BindingDB:BDBM783975 IC50 <1 nM Very high DOI: 10.7270/Q27W6J0N 1