< Back to small molecule database

US12459899, Example 146

E3L042581
Internal ID: BDB042581
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB042581/BDB042581.sdf
Basic Properties
Compound ID
E3L042581
Internal ID
BDB042581
Molecular formula
C25H26FN3O4
Molecular weight
451.498000
Exact mass
451.190735
XLogP
3.0436
TPSA
82.7100
HBA / HBD
5 / 1
Rotatable bonds
5
Heavy atoms / rings
33 / 4
Activity summary
IC50 < 1.00000000 nM
1 activity record(s) imported
InChIKey
FODCTULYAWPZRP-UHFFFAOYSA-N
SMILES
COC(=O)c1ccc(N2CCN(C(=O)CCc3cc4c(C)ccc(F)c4c(=O)[nH]3)CC2)cc1
Aliases
BDBM784054 (preferred) US12459899, Example 146 (source_name) BDBM784054 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1
reported_binder bindingdb_reported Yes No low BindingDB:BDBM784054 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM784054 Open - 10.7270/Q27W6J0N
PubChem CID156317971 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COC(=O)c1ccc(N2CCN(C(=O)CCc3cc4c(C)ccc(F)c4c(=O)[nH]3)CC2)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB042581/BDB042581.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB042581/BDB042581.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB042581/BDB042581.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB042581/BDB042581.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB042581/BDB042581.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component
BindingDB:BDBM784054 IC50 <1 nM Very high DOI: 10.7270/Q27W6J0N 1