< Back to small molecule database

BDBM788153

E3L043024
Internal ID: BDB043024
Activity data available Local docking-ready structure
Dock with P51948
Structure
/e3_file/ligand_db/generated/BDB043024/BDB043024.sdf
Basic Properties
Compound ID
E3L043024
Internal ID
BDB043024
Molecular formula
C24H32N8O
Molecular weight
448.575000
Exact mass
448.269908
XLogP
2.8032
TPSA
103.8100
HBA / HBD
7 / 4
Rotatable bonds
7
Heavy atoms / rings
33 / 5
Activity summary
IC50 unknown 238.00000000 nM
1 activity record(s) imported
InChIKey
ZFPYLHAKPYYSGF-XLIONFOSSA-N
SMILES
Cc1cccc2nc(CNc3cc(NC[C@H]4CCNC[C@@H]4O)nc4c(C(C)C)cnn34)cn12
Aliases
BDBM788153 (preferred) (3R,4R)-4-[[[7-[(5-methylimidazo[1,2-a]pyridin-2-yl)methylamino]-3-propan-2-ylpyrazolo[1,5-a]pyrimidin-5-yl]amino]methyl]piperidin-3-ol (source_name) BDBM788153 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P51948 MNAT1;CAP35;MAT1;RNF66
CDK-activating kinase assembly factor MAT1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM788153 medium
; target=Cyclin-H
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM788153 Open - 10.7270/Q2BC44B5
PubChem CID156525404 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cccc2nc(CNc3cc(NC[C@H]4CCNC[C@@H]4O)nc4c(C(C)C)cnn34)cn12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB043024/BDB043024.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB043024/BDB043024.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB043024/BDB043024.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB043024/BDB043024.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB043024/BDB043024.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Cyclin-H
P51948
E3 ligase component 		BindingDB:BDBM788153 IC50 238 nM Moderate DOI: 10.7270/Q2BC44B5 1