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BDBM50001087

E3L043083

Internal ID: BDB043083

Activity data available Local docking-ready structure

Dock with P98170 Dock with Q13490

Structure

/e3_file/ligand_db/generated/BDB043083/BDB043083.sdf

Basic Properties

Compound ID

E3L043083

Internal ID

BDB043083

Molecular formula

C26H38N6O2

Molecular weight

466.630000

Exact mass

466.305624

XLogP

1.9818

TPSA

93.3600

HBA / HBD

5 / 3

Rotatable bonds

Heavy atoms / rings

34 / 5

Activity summary

IC50 unknown 2500.00000000 nM
2 activity record(s) imported

InChIKey

GOIKWBCAWAVIDC-GGQGVQAJSA-N

SMILES

CN[C@@H](C)C(=O)N[C@H]1CCC[C@H]2C[C@H]3CCN(CCc4nc5cc(C)ccc5[nH]4)C[C@H]3N2C1=O

Aliases

BDBM50001087 (preferred) (2S)-2-(methylamino)-N-[(2S,7R,9S,13S)-4-[2-(6-methyl-1H-benzimidazol-2-yl)ethyl]-14-oxo-1,4-diazatricyclo[7.5.0.02,7]tetradecan-13-yl]propanamide (source_name) BDBM50001087 (source_id)

E3 Relation

E3 UniProt	Gene / protein	Relation type	Ligand role	Direct	Functional	Docking	Source	Evidence
P98170	XIAP;API3;BIRC4;IAP3 E3 ubiquitin-protein ligase XIAP	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM50001087	medium ; target=E3 ubiquitin-protein ligase XIAP
Q13490	BIRC2;API1;MIHB;RNF48 Baculoviral IAP repeat-containing protein 2	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM50001087	medium ; target=Baculoviral IAP repeat-containing protein 2

Sources and Literature

Source	Source ID	Source URL	Download URL	DOI / PMID
BindingDB	BDBM50001087	Open	-	10.1016/j.bmcl.2014.02.016 PMID: 24631189
PubChem	CID90654386	Open	-

Structure Files

Kind	Format	Status	Docking use	File / link	Preparation note
canonical_2d	SMILES	raw	Docking-ready	CN[C@@H](C)C(=O)N[C@H]1CCC[C@H]2C[C@H]3CCN(CCc4nc5cc(C)ccc5[nH]4)C[C@H]3N2C1=O	keep_bindingdb_unique
generated_3d	SDF	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB043083/BDB043083.sdf	Generated from canonical SMILES
generated_3d	MOL2	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB043083/BDB043083.mol2	Generated from canonical SMILES
docking_ready	PDBQT	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB043083/BDB043083.pdbqt	Generated from canonical SMILES
image	PNG	prepared	Reference	public/e3_file/ligand_db/generated/BDB043083/BDB043083.png	Generated from canonical SMILES
image	SVG	prepared	Reference	public/e3_file/ligand_db/generated/BDB043083/BDB043083.svg	Generated from canonical SMILES

Activity

Target	Source	Assay	Result	Potency	Literature	Records
Baculoviral IAP repeat-containing protein 2 Q13490 E3 ligase component	BindingDB:BDBM50001087	IC50	2500 nM	Low	DOI: 10.1016/j.bmcl.2014.02.016 PMID: 24631189	1
E3 ubiquitin-protein ligase XIAP P98170 E3 ligase component	BindingDB:BDBM50001087	IC50	>10000 nM	Low	DOI: 10.1016/j.bmcl.2014.02.016 PMID: 24631189	1