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BDBM50001124

E3L043095

Internal ID: BDB043095

Activity data available Local docking-ready structure

Dock with P98170 Dock with Q13490

Structure

/e3_file/ligand_db/generated/BDB043095/BDB043095.sdf

Basic Properties

Compound ID

E3L043095

Internal ID

BDB043095

Molecular formula

C24H34N4O4

Molecular weight

442.560000

Exact mass

442.258006

XLogP

1.8912

TPSA

90.9800

HBA / HBD

5 / 2

Rotatable bonds

Heavy atoms / rings

32 / 4

Activity summary

IC50 unknown 220.00000000 nM
2 activity record(s) imported

InChIKey

XHQHZHOEQVENMW-DARKYYSBSA-N

SMILES

CN[C@@H](C)C(=O)N[C@H]1CCC[C@H]2C[C@H]3CCN(C(=O)OCc4ccccc4)C[C@H]3N2C1=O

Aliases

BDBM50001124 (preferred) benzyl (2S,7R,9S,13S)-13-[[(2S)-2-(methylamino)propanoyl]amino]-14-oxo-1,4-diazatricyclo[7.5.0.02,7]tetradecane-4-carboxylate (source_name) BDBM50001124 (source_id)

E3 Relation

E3 UniProt	Gene / protein	Relation type	Ligand role	Direct	Functional	Docking	Source	Evidence
P98170	XIAP;API3;BIRC4;IAP3 E3 ubiquitin-protein ligase XIAP	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM50001124	medium ; target=E3 ubiquitin-protein ligase XIAP
Q13490	BIRC2;API1;MIHB;RNF48 Baculoviral IAP repeat-containing protein 2	reported_binder	bindingdb_reported	Yes	No	low	BindingDB:BDBM50001124	medium ; target=Baculoviral IAP repeat-containing protein 2

Sources and Literature

Source	Source ID	Source URL	Download URL	DOI / PMID
BindingDB	BDBM50001124	Open	-	10.1016/j.bmcl.2014.02.016 PMID: 24631189
PubChem	CID90654398	Open	-

Structure Files

Kind	Format	Status	Docking use	File / link	Preparation note
canonical_2d	SMILES	raw	Docking-ready	CN[C@@H](C)C(=O)N[C@H]1CCC[C@H]2C[C@H]3CCN(C(=O)OCc4ccccc4)C[C@H]3N2C1=O	keep_bindingdb_unique
generated_3d	SDF	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB043095/BDB043095.sdf	Generated from canonical SMILES
generated_3d	MOL2	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB043095/BDB043095.mol2	Generated from canonical SMILES
docking_ready	PDBQT	prepared	Docking-ready	public/e3_file/ligand_db/generated/BDB043095/BDB043095.pdbqt	Generated from canonical SMILES
image	PNG	prepared	Reference	public/e3_file/ligand_db/generated/BDB043095/BDB043095.png	Generated from canonical SMILES
image	SVG	prepared	Reference	public/e3_file/ligand_db/generated/BDB043095/BDB043095.svg	Generated from canonical SMILES

Activity

Target	Source	Assay	Result	Potency	Literature	Records
Baculoviral IAP repeat-containing protein 2 Q13490 E3 ligase component	BindingDB:BDBM50001124	IC50	220 nM	Moderate	DOI: 10.1016/j.bmcl.2014.02.016 PMID: 24631189	1
E3 ubiquitin-protein ligase XIAP P98170 E3 ligase component	BindingDB:BDBM50001124	IC50	370 nM	Moderate	DOI: 10.1016/j.bmcl.2014.02.016 PMID: 24631189	1