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BDBM50008754

E3L043530
Internal ID: BDB043530
Activity data available Local docking-ready structure
Dock with Q00987
Structure
/e3_file/ligand_db/generated/BDB043530/BDB043530.sdf
Basic Properties
Compound ID
E3L043530
Internal ID
BDB043530
Molecular formula
C29H35Cl2N3O5S
Molecular weight
608.588000
Exact mass
607.167448
XLogP
5.9678
TPSA
113.3400
HBA / HBD
6 / 1
Rotatable bonds
8
Heavy atoms / rings
40 / 4
Activity summary
IC50 unknown 0.20000000 nM
2 activity record(s) imported
InChIKey
YBMODFWQBWSTTG-FIULFVJVSA-N
SMILES
CC[C@@H](CS(=O)(=O)C(C)(C)C)N1C(=O)[C@@](C)(Cc2noc(=O)[nH]2)C[C@H](c2cccc(Cl)c2)[C@H]1c1ccc(Cl)cc1
Aliases
BDBM50008754 (preferred) 3-[[(3R,5R,6S)-1-[(2S)-1-tert-butylsulfonylbutan-2-yl]-5-(3-chlorophenyl)-6-(4-chlorophenyl)-3-methyl-2-oxopiperidin-3-yl]methyl]-4H-1,2,4-oxadiazol-5-one (source_name) BDBM50008754 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q00987 MDM2
E3 ubiquitin-protein ligase Mdm2		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50008754 medium
; target=E3 ubiquitin-protein ligase Mdm2
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50008754 Open - 10.1021/jm401911v PMID: 24601644
PubChem CID136056460 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC[C@@H](CS(=O)(=O)C(C)(C)C)N1C(=O)[C@@](C)(Cc2noc(=O)[nH]2)C[C@H](c2cccc(Cl)c2)[C@H]1c1ccc(Cl)cc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB043530/BDB043530.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB043530/BDB043530.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB043530/BDB043530.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB043530/BDB043530.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB043530/BDB043530.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM50008754 IC50 1.3 nM Very high DOI: 10.1021/jm401911v
PMID: 24601644 		1
E3 ubiquitin-protein ligase Mdm2
Q00987
E3 ligase component 		BindingDB:BDBM50008754 IC50 0.2 nM Very high DOI: 10.1021/jm401911v
PMID: 24601644 		1