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3-(1-Benzylpiperidin-4-yl)-1-phenylurea

E3L045448
Internal ID: BDB045448
Activity data available Local docking-ready structure
Dock with Q96GG9
Structure
/e3_file/ligand_db/generated/BDB045448/BDB045448.sdf
Basic Properties
Compound ID
E3L045448
Internal ID
BDB045448
Molecular formula
C19H23N3O
Molecular weight
309.413000
Exact mass
309.184112
XLogP
3.4727
TPSA
44.3700
HBA / HBD
2 / 2
Rotatable bonds
4
Heavy atoms / rings
23 / 3
Activity summary
IC50 < 4.10000000 nM
2 activity record(s) imported
InChIKey
FBRUCPZAISLOOV-UHFFFAOYSA-N
SMILES
O=C(Nc1ccccc1)NC1CCN(Cc2ccccc2)CC1
Aliases
BDBM50079170 (preferred) 3-(1-Benzylpiperidin-4-yl)-1-phenylurea (source_name) BDBM50079170 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96GG9 DCUN1D1;DCN1;DCUN1L1;RP42;SCCRO
DCN1-like protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50079170 medium
; target=DCN1-like protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50079170 Open - 10.1021/acs.jmedchem.7b01277; 10.7270/Q2736V2B PMID: 29547696
PubChem CID4064342 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(Nc1ccccc1)NC1CCN(Cc2ccccc2)CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB045448/BDB045448.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB045448/BDB045448.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB045448/BDB045448.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB045448/BDB045448.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB045448/BDB045448.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM50079170 IC50 >67000 nM Low DOI: 10.1021/acs.jmedchem.7b01277
PMID: 29547696 		1
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM50079170 IC50 <4.1 nM Very high DOI: 10.7270/Q2736V2B 1