< Back to small molecule database

BDBM50095455

E3L045622
Internal ID: BDB045622
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB045622/BDB045622.sdf
Basic Properties
Compound ID
E3L045622
Internal ID
BDB045622
Molecular formula
C10H20N2O4
Molecular weight
232.280000
Exact mass
232.142307
XLogP
0.4108
TPSA
81.0800
HBA / HBD
4 / 2
Rotatable bonds
8
Heavy atoms / rings
16 / 0
Activity summary
IC50 unknown 18000.00000000 nM
1 activity record(s) imported
InChIKey
DXHOTYILSHSDKX-UHFFFAOYSA-N
SMILES
CN(C)CCCCC(=O)N(O)CCC(=O)O
Aliases
BDBM50095455 (preferred) 3-[5-(Dimethylamino)pentanoyl-hydroxyamino]propanoic acid (source_name) BDBM50095455 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50095455 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50095455 Open - 10.1021/acsmedchemlett.5b00083 PMID: 26101571
PubChem CID53380011 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN(C)CCCCC(=O)N(O)CCC(=O)O keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB045622/BDB045622.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB045622/BDB045622.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB045622/BDB045622.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB045622/BDB045622.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB045622/BDB045622.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM50095455 IC50 18000 nM Low DOI: 10.1021/acsmedchemlett.5b00083
PMID: 26101571 		1