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BDBM50095460

E3L045627
Internal ID: BDB045627
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB045627/BDB045627.sdf
Basic Properties
Compound ID
E3L045627
Internal ID
BDB045627
Molecular formula
C15H30N2O4
Molecular weight
302.415000
Exact mass
302.220557
XLogP
2.0596
TPSA
70.0800
HBA / HBD
5 / 1
Rotatable bonds
12
Heavy atoms / rings
21 / 0
Activity summary
IC50 unknown 63000.00000000 nM
1 activity record(s) imported
InChIKey
LDNDMOZSSKLUQI-UHFFFAOYSA-N
SMILES
CCCCCN(C)CCCCC(=O)N(O)CCC(=O)OC
Aliases
BDBM50095460 (preferred) Methyl 3-[hydroxy-[5-[methyl(pentyl)amino]pentanoyl]amino]propanoate (source_name) BDBM50095460 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50095460 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50095460 Open - 10.1021/acsmedchemlett.5b00083 PMID: 26101571
PubChem CID122181589 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCCCCN(C)CCCCC(=O)N(O)CCC(=O)OC keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB045627/BDB045627.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB045627/BDB045627.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB045627/BDB045627.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB045627/BDB045627.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB045627/BDB045627.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM50095460 IC50 63000 nM Low DOI: 10.1021/acsmedchemlett.5b00083
PMID: 26101571 		1