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4-Nitrophenanthridin-6(5h)-one

E3L045751
Internal ID: BDB045751
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB045751/BDB045751.sdf
Basic Properties
Compound ID
E3L045751
Internal ID
BDB045751
Molecular formula
C13H8N2O3
Molecular weight
240.218000
Exact mass
240.053492
XLogP
2.5895
TPSA
76.0000
HBA / HBD
3 / 1
Rotatable bonds
1
Heavy atoms / rings
18 / 3
Activity summary
IC50 unknown 6100.00000000 nM
1 activity record(s) imported
InChIKey
PQKGWMHEHBQWIR-UHFFFAOYSA-N
SMILES
O=c1[nH]c2c([N+](=O)[O-])cccc2c2ccccc12
Aliases
BDBM50101117 (preferred) 4-Nitrophenanthridin-6(5h)-one (source_name) BDBM50101117 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50101117 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50101117 Open - 10.1016/s0960-894x(01)00281-5 PMID: 11425538
PubChem CID269083 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=c1[nH]c2c([N+](=O)[O-])cccc2c2ccccc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB045751/BDB045751.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB045751/BDB045751.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB045751/BDB045751.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB045751/BDB045751.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB045751/BDB045751.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50101117 IC50 6100 nM Low DOI: 10.1016/s0960-894x(01)00281-5
PMID: 11425538 		1