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Benzamide

E3L045848
Internal ID: BDB045848
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB045848/BDB045848.sdf
Basic Properties
Compound ID
E3L045848
Internal ID
BDB045848
Molecular formula
C7H7NO
Molecular weight
121.139000
Exact mass
121.052764
XLogP
0.7855
TPSA
43.0900
HBA / HBD
1 / 1
Rotatable bonds
1
Heavy atoms / rings
9 / 1
Activity summary
IC50 unknown 5400.00000000 nM
3 activity record(s) imported
InChIKey
KXDAEFPNCMNJSK-UHFFFAOYSA-N
SMILES
NC(=O)c1ccccc1
Aliases
BDBM50106187 (preferred) Benzamide (source_name) BDBM50106187 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50106187 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50106187 Open - 10.1021/jm010116l; 10.1021/jm200325s; 10.1021/jm030109s PMID: 11689065; 21692479; 12825952
PubChem CID2331 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready NC(=O)c1ccccc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB045848/BDB045848.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB045848/BDB045848.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB045848/BDB045848.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB045848/BDB045848.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB045848/BDB045848.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50106187 IC50 5400 nM Low DOI: 10.1021/jm200325s
PMID: 21692479 		1
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50106187 IC50 22000 nM Low DOI: 10.1021/jm010116l
PMID: 11689065 		1
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50106187 IC50 20000 nM Low DOI: 10.1021/jm030109s
PMID: 12825952 		1