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BDBM50110836

E3L045988
Internal ID: BDB045988
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB045988/BDB045988.sdf
Basic Properties
Compound ID
E3L045988
Internal ID
BDB045988
Molecular formula
C19H25N3O3
Molecular weight
343.427000
Exact mass
343.189592
XLogP
1.3847
TPSA
75.8700
HBA / HBD
4 / 1
Rotatable bonds
3
Heavy atoms / rings
25 / 4
Activity summary
Kd < 30.00000000 nM
4 activity record(s) imported
InChIKey
JDUWWYRZYIZTIV-UHFFFAOYSA-N
SMILES
NC(=O)c1cccc2c1C(=O)N(C1CCN(C3CCOCC3)CC1)C2
Aliases
BDBM50110836 (preferred) 2-[1-(oxan-4-yl)piperidin-4-yl]-3-oxo-1H-isoindole-4-carboxamide (source_name) BDBM50110836 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50110836 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50110836 Open - 10.1021/acs.jmedchem.5b00680; 10.7270/Q2BP05VW; 10.7270/Q20G3PCS PMID: 26222319
PubChem CID73774959 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready NC(=O)c1cccc2c1C(=O)N(C1CCN(C3CCOCC3)CC1)C2 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB045988/BDB045988.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB045988/BDB045988.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB045988/BDB045988.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB045988/BDB045988.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB045988/BDB045988.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50110836 IC50 560 nM Moderate DOI: 10.1021/acs.jmedchem.5b00680
PMID: 26222319 		1
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50110836 Kd <30 nM High DOI: 10.1021/acs.jmedchem.5b00680
PMID: 26222319 		1
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50110836 Kd <30 nM High DOI: 10.7270/Q2BP05VW 1
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50110836 Kd <30 nM High DOI: 10.7270/Q20G3PCS 1