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BDBM50120235

E3L046020
Internal ID: BDB046020
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB046020/BDB046020.sdf
Basic Properties
Compound ID
E3L046020
Internal ID
BDB046020
Molecular formula
C24H23N3O4S
Molecular weight
449.532000
Exact mass
449.140927
XLogP
2.3821
TPSA
101.0300
HBA / HBD
5 / 2
Rotatable bonds
7
Heavy atoms / rings
32 / 4
Activity summary
IC50 unknown 70.00000000 nM
2 activity record(s) imported
InChIKey
RJHWZPBAYUDHTP-UHFFFAOYSA-N
SMILES
O=C(CCn1c2c(c(=O)[nH]c1=O)CSCC2)NCC(=O)c1cccc(-c2ccccc2)c1
Aliases
BDBM50120235 (preferred) N-(2-Biphenyl-3-yl-2-oxo-ethyl)-3-(2,4-dioxo-3,4,7,8-tetrahydro-2H,5H-thiopyrano[4,3-d]pyrimidin-1-yl)-propionamide (source_name) BDBM50120235 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50120235 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50120235 Open - 10.1016/s0960-894x(02)00602-9 PMID: 12372530
PubChem CID44337990 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(CCn1c2c(c(=O)[nH]c1=O)CSCC2)NCC(=O)c1cccc(-c2ccccc2)c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB046020/BDB046020.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB046020/BDB046020.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB046020/BDB046020.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB046020/BDB046020.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB046020/BDB046020.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50120235 IC50 70 nM High DOI: 10.1016/s0960-894x(02)00602-9
PMID: 12372530 		1
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50120235 EC50 2000 nM Low DOI: 10.1016/s0960-894x(02)00602-9
PMID: 12372530 		1