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BDBM50120247

E3L046032
Internal ID: BDB046032
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB046032/BDB046032.sdf
Basic Properties
Compound ID
E3L046032
Internal ID
BDB046032
Molecular formula
C22H21N3O4S
Molecular weight
423.494000
Exact mass
423.125277
XLogP
1.8683
TPSA
101.0300
HBA / HBD
5 / 2
Rotatable bonds
6
Heavy atoms / rings
30 / 4
Activity summary
IC50 unknown 8.50000000 nM
2 activity record(s) imported
InChIKey
HMLDGSXDCNSVNJ-UHFFFAOYSA-N
SMILES
O=C(CCn1c2c(c(=O)[nH]c1=O)CSCC2)NCC(=O)c1ccc2ccccc2c1
Aliases
BDBM50120247 (preferred) 3-(2,4-Dioxo-3,4,7,8-tetrahydro-2H,5H-thiopyrano[4,3-d]pyrimidin-1-yl)-N-(2-naphthalen-2-yl-2-oxo-ethyl)-propionamide (source_name) BDBM50120247 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50120247 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50120247 Open - 10.1016/s0960-894x(02)00602-9 PMID: 12372530
PubChem CID44337979 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=C(CCn1c2c(c(=O)[nH]c1=O)CSCC2)NCC(=O)c1ccc2ccccc2c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB046032/BDB046032.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB046032/BDB046032.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB046032/BDB046032.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB046032/BDB046032.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB046032/BDB046032.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50120247 IC50 8.5 nM Very high DOI: 10.1016/s0960-894x(02)00602-9
PMID: 12372530 		1
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50120247 EC50 80 nM High DOI: 10.1016/s0960-894x(02)00602-9
PMID: 12372530 		1