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2-piperazin-1-yl-5H-benzo[c][1,5]naphthyridin-6-one

E3L046277
Internal ID: BDB046277
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB046277/BDB046277.sdf
Basic Properties
Compound ID
E3L046277
Internal ID
BDB046277
Molecular formula
C16H16N4O
Molecular weight
280.331000
Exact mass
280.132411
XLogP
1.4859
TPSA
61.0200
HBA / HBD
4 / 2
Rotatable bonds
1
Heavy atoms / rings
21 / 4
Activity summary
IC50 unknown 58.00000000 nM
1 activity record(s) imported
InChIKey
JZJBZCAAHYFICB-UHFFFAOYSA-N
SMILES
O=c1[nH]c2ccc(N3CCNCC3)nc2c2ccccc12
Aliases
BDBM50130568 (preferred) 2-piperazin-1-yl-5H-benzo[c][1,5]naphthyridin-6-one (source_name) BDBM50130568 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50130568 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50130568 Open - 10.1021/jm030109s PMID: 12825952
PubChem CID10970843 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=c1[nH]c2ccc(N3CCNCC3)nc2c2ccccc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB046277/BDB046277.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB046277/BDB046277.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB046277/BDB046277.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB046277/BDB046277.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB046277/BDB046277.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50130568 IC50 58 nM High DOI: 10.1021/jm030109s
PMID: 12825952 		1