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5H-Benzo[c][1,6]naphthyridin-6-one

E3L046288
Internal ID: BDB046288
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB046288/BDB046288.sdf
Basic Properties
Compound ID
E3L046288
Internal ID
BDB046288
Molecular formula
C12H8N2O
Molecular weight
196.209000
Exact mass
196.063663
XLogP
2.0763
TPSA
45.7500
HBA / HBD
2 / 1
Rotatable bonds
0
Heavy atoms / rings
15 / 3
Activity summary
IC50 unknown 128.00000000 nM
2 activity record(s) imported
InChIKey
PHKKGRKUGQPYDX-UHFFFAOYSA-N
SMILES
O=c1[nH]c2ccncc2c2ccccc12
Aliases
BDBM50130579 (preferred) 5H-Benzo[c][1,6]naphthyridin-6-one (source_name) BDBM50130579 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50130579 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50130579 Open - 10.1016/s0960-894x(03)00465-7; 10.1021/jm030109s PMID: 12852955; 12825952
PubChem CID15488572 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=c1[nH]c2ccncc2c2ccccc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB046288/BDB046288.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB046288/BDB046288.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB046288/BDB046288.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB046288/BDB046288.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB046288/BDB046288.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50130579 IC50 128 nM Moderate DOI: 10.1021/jm030109s
PMID: 12825952 		1
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50130579 IC50 128 nM Moderate DOI: 10.1016/s0960-894x(03)00465-7
PMID: 12852955 		1