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BDBM50149920

E3L046777
Internal ID: BDB046777
Activity data available Local docking-ready structure
Dock with P41229
Structure
/e3_file/ligand_db/generated/BDB046777/BDB046777.sdf
Basic Properties
Compound ID
E3L046777
Internal ID
BDB046777
Molecular formula
C15H15N5O2
Molecular weight
297.318000
Exact mass
297.122575
XLogP
2.4220
TPSA
85.6900
HBA / HBD
5 / 1
Rotatable bonds
3
Heavy atoms / rings
22 / 4
Activity summary
IC50 unknown 126.00000000 nM
3 activity record(s) imported
InChIKey
ARDXICZNEUJDDE-UHFFFAOYSA-N
SMILES
O=c1[nH]c(Oc2cnn(C3CCCC3)c2)nc2cnccc12
Aliases
BDBM50149920 (preferred) 2-[(1-Cyclopentylpyrazol-4-yl)oxy]pyrido[3,4-d]pyrimidin-4-ol (source_name) BDBM50149920 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P41229 KDM5C;DXS1272E;JARID1C;SMCX;XE169
Lysine-specific demethylase 5C		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50149920 medium
; target=Lysine-specific demethylase 5C
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50149920 Open - 10.1021/acs.jmedchem.5b01538 PMID: 26771203
PubChem CID136053680 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready O=c1[nH]c(Oc2cnn(C3CCCC3)c2)nc2cnccc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB046777/BDB046777.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB046777/BDB046777.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB046777/BDB046777.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB046777/BDB046777.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB046777/BDB046777.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5C
P41229
E3 ligase component 		BindingDB:BDBM50149920 IC50 5010 nM Low DOI: 10.1021/acs.jmedchem.5b01538
PMID: 26771203 		1
Lysine-specific demethylase 5C
P41229
E3 ligase component 		BindingDB:BDBM50149920 IC50 126 nM Moderate DOI: 10.1021/acs.jmedchem.5b01538
PMID: 26771203 		1
Lysine-specific demethylase 5C
P41229
E3 ligase component 		BindingDB:BDBM50149920 IC50 5012 nM Low DOI: 10.1021/acs.jmedchem.5b01538
PMID: 26771203 		1