< Back to small molecule database

BDBM50184961

E3L047828
Internal ID: BDB047828
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB047828/BDB047828.sdf
Basic Properties
Compound ID
E3L047828
Internal ID
BDB047828
Molecular formula
C25H24ClFN4O3
Molecular weight
482.943000
Exact mass
482.152097
XLogP
5.3668
TPSA
78.7200
HBA / HBD
5 / 1
Rotatable bonds
5
Heavy atoms / rings
34 / 4
Activity summary
IC50 > 20000.00000000 nM
1 activity record(s) imported
InChIKey
LGNBAVDYDKZVKP-UHFFFAOYSA-N
SMILES
Cc1c(F)ccc(C(=O)Nc2ccc(-c3ccc([N+](=O)[O-])cc3)cc2N2CCN(C)CC2)c1Cl
Aliases
BDBM50184961 (preferred) 2-chloro-4-fluoro-3-methyl-N-[2-(4-methylpiperazin-1-yl)-4-(4-nitrophenyl)phenyl]benzamide (source_name) BDBM50184961 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50184961 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50184961 Open - 10.1016/j.ejmech.2016.04.032 PMID: 27116709
PubChem CID127052956 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1c(F)ccc(C(=O)Nc2ccc(-c3ccc([N+](=O)[O-])cc3)cc2N2CCN(C)CC2)c1Cl keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB047828/BDB047828.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB047828/BDB047828.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB047828/BDB047828.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB047828/BDB047828.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB047828/BDB047828.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component 		BindingDB:BDBM50184961 IC50 >20000 nM Low DOI: 10.1016/j.ejmech.2016.04.032
PMID: 27116709 		1