< Back to small molecule database

BDBM50195326

E3L048160
Internal ID: BDB048160
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB048160/BDB048160.sdf
Basic Properties
Compound ID
E3L048160
Internal ID
BDB048160
Molecular formula
C21H23FN4O5
Molecular weight
430.436000
Exact mass
430.165248
XLogP
2.9147
TPSA
105.0200
HBA / HBD
7 / 1
Rotatable bonds
6
Heavy atoms / rings
31 / 3
Activity summary
IC50 > 20.00000000 nM
1 activity record(s) imported
InChIKey
PNNOENQRMKNOMV-UHFFFAOYSA-N
SMILES
CCOC(=O)c1ccc(N2CCN(C)CC2)c(NC(=O)c2ccc(F)c([N+](=O)[O-])c2)c1
Aliases
BDBM50195326 (preferred) Ethyl 3-[(4-fluoro-3-nitrobenzoyl)amino]-4-(4-methylpiperazin-1-yl)benzoate (source_name) BDBM50195326 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50195326 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50195326 Open - 10.1016/j.bmc.2016.09.073 PMID: 27720555
PubChem CID134148875 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCOC(=O)c1ccc(N2CCN(C)CC2)c(NC(=O)c2ccc(F)c([N+](=O)[O-])c2)c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB048160/BDB048160.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB048160/BDB048160.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB048160/BDB048160.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB048160/BDB048160.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB048160/BDB048160.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component 		BindingDB:BDBM50195326 IC50 >20 nM Uncertain DOI: 10.1016/j.bmc.2016.09.073
PMID: 27720555 		1