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BDBM50208368

E3L048521
Internal ID: BDB048521
Activity data available Local docking-ready structure
Dock with P61964
Structure
/e3_file/ligand_db/generated/BDB048521/BDB048521.sdf
Basic Properties
Compound ID
E3L048521
Internal ID
BDB048521
Molecular formula
C23H22FN5O3
Molecular weight
435.459000
Exact mass
435.170668
XLogP
3.8000
TPSA
91.6100
HBA / HBD
6 / 1
Rotatable bonds
5
Heavy atoms / rings
32 / 4
Activity summary
IC50 unknown 198.00000000 nM
1 activity record(s) imported
InChIKey
GHGXZZPYSYWLSZ-UHFFFAOYSA-N
SMILES
CN1CCN(c2ccc(-c3ccncc3)cc2NC(=O)c2ccc(F)c([N+](=O)[O-])c2)CC1
Aliases
BDBM50208368 (preferred) 4-fluoro-N-[2-(4-methylpiperazin-1-yl)-5-pyridin-4-ylphenyl]-3-nitrobenzamide (source_name) BDBM50208368 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P61964 WDR5;BIG3
WD repeat-containing protein 5		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50208368 medium
; target=WD repeat-containing protein 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50208368 Open - 10.1016/j.ejmech.2016.08.036 PMID: 27598236
PubChem CID134130102 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CN1CCN(c2ccc(-c3ccncc3)cc2NC(=O)c2ccc(F)c([N+](=O)[O-])c2)CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB048521/BDB048521.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB048521/BDB048521.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB048521/BDB048521.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB048521/BDB048521.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB048521/BDB048521.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
WD repeat-containing protein 5
P61964
E3 ligase component 		BindingDB:BDBM50208368 IC50 198 nM Moderate DOI: 10.1016/j.ejmech.2016.08.036
PMID: 27598236 		1