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BDBM50231839

E3L049064
Internal ID: BDB049064
Activity data available Local docking-ready structure
Dock with O75530
Structure
/e3_file/ligand_db/generated/BDB049064/BDB049064.sdf
Basic Properties
Compound ID
E3L049064
Internal ID
BDB049064
Molecular formula
C26H33FN4
Molecular weight
420.576000
Exact mass
420.268925
XLogP
4.4037
TPSA
33.5100
HBA / HBD
4 / 0
Rotatable bonds
5
Heavy atoms / rings
31 / 4
Activity summary
IC50 unknown 70.00000000 nM
2 activity record(s) imported
InChIKey
JTNSIVBJGJOJKD-RSXGOPAZSA-N
SMILES
Cc1cccc(F)c1CN1C[C@H](c2ccc(N3CCC(C#N)CC3)cc2)[C@@H](N(C)C)C1
Aliases
BDBM50231839 (preferred) 1-[4-[(3S,4R)-4-(dimethylamino)-1-[(2-fluoro-6-methylphenyl)methyl]pyrrolidin-3-yl]phenyl]piperidine-4-carbonitrile (source_name) BDBM50231839 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O75530 EED
Polycomb protein EED		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50231839 medium
; target=Polycomb protein EED
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50231839 Open - 10.1021/acsmedchemlett.7b00054 PMID: 28435537
PubChem CID137655692 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cccc(F)c1CN1C[C@H](c2ccc(N3CCC(C#N)CC3)cc2)[C@@H](N(C)C)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB049064/BDB049064.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB049064/BDB049064.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB049064/BDB049064.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB049064/BDB049064.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB049064/BDB049064.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Polycomb protein EED
O75530
E3 ligase component 		BindingDB:BDBM50231839 IC50 140 nM Moderate DOI: 10.1021/acsmedchemlett.7b00054
PMID: 28435537 		1
Polycomb protein EED
O75530
E3 ligase component 		BindingDB:BDBM50231839 IC50 70 nM High DOI: 10.1021/acsmedchemlett.7b00054
PMID: 28435537 		1