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BDBM50231876

E3L049099
Internal ID: BDB049099
Activity data available Local docking-ready structure
Dock with O75530
Structure
/e3_file/ligand_db/generated/BDB049099/BDB049099.sdf
Basic Properties
Compound ID
E3L049099
Internal ID
BDB049099
Molecular formula
C27H37FN4O
Molecular weight
452.618000
Exact mass
452.295140
XLogP
3.7223
TPSA
30.0300
HBA / HBD
4 / 0
Rotatable bonds
5
Heavy atoms / rings
33 / 4
Activity summary
IC50 unknown 160.00000000 nM
2 activity record(s) imported
InChIKey
BOIHDVKRPXGSLH-VPUSJEBWSA-N
SMILES
CC(=O)N1CCCN(c2ccc([C@H]3CN(Cc4c(C)cccc4F)C[C@@H]3N(C)C)cc2)CC1
Aliases
BDBM50231876 (preferred) 1-[4-[4-[(3S,4R)-4-(dimethylamino)-1-[(2-fluoro-6-methylphenyl)methyl]pyrrolidin-3-yl]phenyl]-1,4-diazepan-1-yl]ethanone (source_name) BDBM50231876 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
O75530 EED
Polycomb protein EED		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50231876 medium
; target=Polycomb protein EED
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50231876 Open - 10.1021/acsmedchemlett.7b00054 PMID: 28435537
PubChem CID137651932 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(=O)N1CCCN(c2ccc([C@H]3CN(Cc4c(C)cccc4F)C[C@@H]3N(C)C)cc2)CC1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB049099/BDB049099.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB049099/BDB049099.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB049099/BDB049099.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB049099/BDB049099.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB049099/BDB049099.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Polycomb protein EED
O75530
E3 ligase component 		BindingDB:BDBM50231876 IC50 160 nM Moderate DOI: 10.1021/acsmedchemlett.7b00054
PMID: 28435537 		1
Polycomb protein EED
O75530
E3 ligase component 		BindingDB:BDBM50231876 IC50 270 nM Moderate DOI: 10.1021/acsmedchemlett.7b00054
PMID: 28435537 		1