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BDBM50238547

E3L049402
Internal ID: BDB049402
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB049402/BDB049402.sdf
Basic Properties
Compound ID
E3L049402
Internal ID
BDB049402
Molecular formula
C17H14N4O5S
Molecular weight
386.389000
Exact mass
386.068491
XLogP
2.9885
TPSA
127.2200
HBA / HBD
7 / 2
Rotatable bonds
6
Heavy atoms / rings
27 / 3
Activity summary
IC50 unknown 830.00000000 nM
1 activity record(s) imported
InChIKey
RQRDZWLYKSTGLC-UHFFFAOYSA-N
SMILES
COC(=O)c1ccccc1NC(=O)CSc1nc2cc([N+](=O)[O-])ccc2[nH]1
Aliases
BDBM50238547 (preferred) methyl 2-({[(5-nitro-1H-benzimidazol-2-yl)thio]acetyl}amino)benzoate (source_name) BDBM50238547 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50238547 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50238547 Open - 10.1021/acs.jmedchem.7b00587 PMID: 28650658
PubChem CID2946638 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COC(=O)c1ccccc1NC(=O)CSc1nc2cc([N+](=O)[O-])ccc2[nH]1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB049402/BDB049402.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB049402/BDB049402.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB049402/BDB049402.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB049402/BDB049402.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB049402/BDB049402.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM50238547 IC50 830 nM Moderate DOI: 10.1021/acs.jmedchem.7b00587
PMID: 28650658 		1