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BDBM50238597

E3L049415
Internal ID: BDB049415
Activity data available Local docking-ready structure
Dock with Q9BQA1
Structure
/e3_file/ligand_db/generated/BDB049415/BDB049415.sdf
Basic Properties
Compound ID
E3L049415
Internal ID
BDB049415
Molecular formula
C19H20N4O3S
Molecular weight
384.461000
Exact mass
384.125612
XLogP
3.0041
TPSA
87.3200
HBA / HBD
5 / 2
Rotatable bonds
6
Heavy atoms / rings
27 / 3
Activity summary
IC50 > 200000.00000000 nM
1 activity record(s) imported
InChIKey
NBDFRUKPNZQQPV-UHFFFAOYSA-N
SMILES
COc1ccc2[nH]c(SCC(=O)Nc3ccccc3C(=O)N(C)C)nc2c1
Aliases
BDBM50238597 (preferred) 2-[[2-[(6-methoxy-1H-benzimidazol-2-yl)sulfanyl]acetyl]amino]-N,N-dimethylbenzamide (source_name) BDBM50238597 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q9BQA1 WDR77;MEP50;WD45;HKMT1069;Nbla10071
Methylosome protein WDR77		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50238597 medium
; target=Protein arginine N-methyltransferase 5
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50238597 Open - 10.1021/acs.jmedchem.7b00587 PMID: 28650658
PubChem CID135223494 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready COc1ccc2[nH]c(SCC(=O)Nc3ccccc3C(=O)N(C)C)nc2c1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB049415/BDB049415.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB049415/BDB049415.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB049415/BDB049415.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB049415/BDB049415.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB049415/BDB049415.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Protein arginine N-methyltransferase 5
Q9BQA1
E3 ligase component 		BindingDB:BDBM50238597 IC50 >200000 nM Low DOI: 10.1021/acs.jmedchem.7b00587
PMID: 28650658 		1