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BDBM50245006

E3L049625
Internal ID: BDB049625
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB049625/BDB049625.sdf
Basic Properties
Compound ID
E3L049625
Internal ID
BDB049625
Molecular formula
C21H19ClN4O3
Molecular weight
410.861000
Exact mass
410.114568
XLogP
3.9967
TPSA
93.0300
HBA / HBD
4 / 2
Rotatable bonds
7
Heavy atoms / rings
29 / 4
Activity summary
Kd unknown 410.00000000 nM
2 activity record(s) imported
InChIKey
ULBCSYUKODTPKF-UHFFFAOYSA-N
SMILES
Cn1ccnc1CCOC(c1cc2nccc(C(=O)O)c2[nH]1)c1ccccc1Cl
Aliases
BDBM50245006 (preferred) 2-[(2-chlorophenyl)-[2-(1-methylimidazol-2-yl)ethoxy]methyl]-1H-pyrrolo[3,2-b]pyridine-7-carboxylic acid (source_name) BDBM50245006 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50245006 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50245006 Open - 10.1021/acs.jmedchem.8b00261 PMID: 29537847
PubChem CID133053810 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cn1ccnc1CCOC(c1cc2nccc(C(=O)O)c2[nH]1)c1ccccc1Cl keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB049625/BDB049625.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB049625/BDB049625.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB049625/BDB049625.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB049625/BDB049625.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB049625/BDB049625.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM50245006 IC50 1400 nM Low DOI: 10.1021/acs.jmedchem.8b00261
PMID: 29537847 		1
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM50245006 Kd 410 nM Moderate DOI: 10.1021/acs.jmedchem.8b00261
PMID: 29537847 		1