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BDBM50248728

E3L049797
Internal ID: BDB049797
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB049797/BDB049797.sdf
Basic Properties
Compound ID
E3L049797
Internal ID
BDB049797
Molecular formula
C16H19N5O3
Molecular weight
329.360000
Exact mass
329.148789
XLogP
0.4025
TPSA
121.1800
HBA / HBD
4 / 3
Rotatable bonds
4
Heavy atoms / rings
24 / 3
Activity summary
IC50 unknown 83.00000000 nM
1 activity record(s) imported
InChIKey
OUPXANVWMGEWCL-UHFFFAOYSA-N
SMILES
CCC(=O)NC1CCN(C(=O)c2nc3c(C(N)=O)cccc3[nH]2)C1
Aliases
BDBM50248728 (preferred) 2-[3-(propanoylamino)pyrrolidine-1-carbonyl]-1H-benzimidazole-4-carboxamide (source_name) BDBM50248728 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50248728 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50248728 Open - 10.1016/j.ejmech.2017.03.013 PMID: 28340412
PubChem CID137634533 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCC(=O)NC1CCN(C(=O)c2nc3c(C(N)=O)cccc3[nH]2)C1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB049797/BDB049797.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB049797/BDB049797.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB049797/BDB049797.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB049797/BDB049797.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB049797/BDB049797.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50248728 IC50 83 nM High DOI: 10.1016/j.ejmech.2017.03.013
PMID: 28340412 		1