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BDBM50248755

E3L049815
Internal ID: BDB049815
Activity data available Local docking-ready structure
Dock with P09874
Structure
/e3_file/ligand_db/generated/BDB049815/BDB049815.sdf
Basic Properties
Compound ID
E3L049815
Internal ID
BDB049815
Molecular formula
C19H25N5O2
Molecular weight
355.442000
Exact mass
355.200825
XLogP
1.7986
TPSA
104.1100
HBA / HBD
4 / 3
Rotatable bonds
4
Heavy atoms / rings
26 / 4
Activity summary
IC50 > 1000.00000000 nM
1 activity record(s) imported
InChIKey
OYKBBGDFAVSPDF-UHFFFAOYSA-N
SMILES
NC(=O)c1cccc2[nH]c(C(=O)NC3CCN(C4CCCCC4)C3)nc12
Aliases
BDBM50248755 (preferred) 2-N-(1-cyclohexylpyrrolidin-3-yl)-1H-benzimidazole-2,4-dicarboxamide (source_name) BDBM50248755 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P09874 PARP1;ADPRT;PPOL
Poly [ADP-ribose] polymerase 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50248755 medium
; target=Poly [ADP-ribose] polymerase 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50248755 Open - 10.1016/j.ejmech.2017.03.013 PMID: 28340412
PubChem CID137632114 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready NC(=O)c1cccc2[nH]c(C(=O)NC3CCN(C4CCCCC4)C3)nc12 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB049815/BDB049815.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB049815/BDB049815.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB049815/BDB049815.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB049815/BDB049815.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB049815/BDB049815.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Poly [ADP-ribose] polymerase 1
P09874
E3 ligase component 		BindingDB:BDBM50248755 IC50 >1000 nM Moderate DOI: 10.1016/j.ejmech.2017.03.013
PMID: 28340412 		1