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BDBM50253043

E3L049963
Internal ID: BDB049963
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB049963/BDB049963.sdf
Basic Properties
Compound ID
E3L049963
Internal ID
BDB049963
Molecular formula
C18H22N4O2
Molecular weight
326.400000
Exact mass
326.174276
XLogP
2.1776
TPSA
78.0900
HBA / HBD
3 / 2
Rotatable bonds
4
Heavy atoms / rings
24 / 3
Activity summary
IC50 unknown 99.00000000 nM
2 activity record(s) imported
InChIKey
RNQBSNIBYKAZGI-UHFFFAOYSA-N
SMILES
CC(C)c1cc(C(=O)N2CCC(NC(=O)c3ccccc3)C2)[nH]n1
Aliases
BDBM50253043 (preferred) N-[1-(5-propan-2-yl-1H-pyrazole-3-carbonyl)pyrrolidin-3-yl]benzamide (source_name) BDBM50253043 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50253043 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50253043 Open - 10.1016/j.bmcl.2017.05.016 PMID: 28512031
PubChem CID137638363 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CC(C)c1cc(C(=O)N2CCC(NC(=O)c3ccccc3)C2)[nH]n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB049963/BDB049963.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB049963/BDB049963.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB049963/BDB049963.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB049963/BDB049963.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB049963/BDB049963.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM50253043 IC50 99 nM High DOI: 10.1016/j.bmcl.2017.05.016
PMID: 28512031 		1
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM50253043 EC50 6500 nM Low DOI: 10.1016/j.bmcl.2017.05.016
PMID: 28512031 		1