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BDBM50253058

E3L049971
Internal ID: BDB049971
Activity data available Local docking-ready structure
Dock with P29375
Structure
/e3_file/ligand_db/generated/BDB049971/BDB049971.sdf
Basic Properties
Compound ID
E3L049971
Internal ID
BDB049971
Molecular formula
C19H22N6O
Molecular weight
350.426000
Exact mass
350.185509
XLogP
2.4517
TPSA
79.7000
HBA / HBD
4 / 1
Rotatable bonds
3
Heavy atoms / rings
26 / 4
Activity summary
IC50 unknown 2600.00000000 nM
1 activity record(s) imported
InChIKey
VSXQHGDYMVKVRR-UHFFFAOYSA-N
SMILES
Cc1cc(C(=O)N2CCC(c3cc(-c4cnn(C)c4)cc(C)n3)C2)[nH]n1
Aliases
BDBM50253058 (preferred) [3-[6-methyl-4-(1-methylpyrazol-4-yl)-2-pyridinyl]pyrrolidin-1-yl]-(5-methyl-1H-pyrazol-3-yl)methanone (source_name) BDBM50253058 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
P29375 KDM5A;JARID1A;RBBP2;RBP2
Lysine-specific demethylase 5A		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50253058 medium
; target=Lysine-specific demethylase 5A
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50253058 Open - 10.1016/j.bmcl.2017.05.016 PMID: 28512031
PubChem CID121279698 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready Cc1cc(C(=O)N2CCC(c3cc(-c4cnn(C)c4)cc(C)n3)C2)[nH]n1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB049971/BDB049971.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB049971/BDB049971.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB049971/BDB049971.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB049971/BDB049971.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB049971/BDB049971.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
Lysine-specific demethylase 5A
P29375
E3 ligase component 		BindingDB:BDBM50253058 IC50 2600 nM Low DOI: 10.1016/j.bmcl.2017.05.016
PMID: 28512031 		1