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BDBM50271340

E3L050557
Internal ID: BDB050557
Activity data available Local docking-ready structure
Dock with Q96GG9
Structure
/e3_file/ligand_db/generated/BDB050557/BDB050557.sdf
Basic Properties
Compound ID
E3L050557
Internal ID
BDB050557
Molecular formula
C37H49N5O4
Molecular weight
627.830000
Exact mass
627.378455
XLogP
4.2255
TPSA
142.4200
HBA / HBD
5 / 5
Rotatable bonds
16
Heavy atoms / rings
46 / 4
Activity summary
Ki unknown 380.00000000 nM
3 activity record(s) imported
InChIKey
JSAPFBCRNWYBJJ-IEIMDBBZSA-N
SMILES
CCC(=O)N[C@@H](Cc1ccc2ccccc2c1)C(=O)N[C@H](C(=O)N[C@@H](CCCCN)C(=O)N[C@H]1CCc2ccccc21)[C@@H](C)CC
Aliases
BDBM50271340 (preferred) (2S)-6-amino-N-[(1S)-2,3-dihydro-1H-inden-1-yl]-2-[[(2S,3S)-3-methyl-2-[[(2S)-3-naphthalen-2-yl-2-(propanoylamino)propanoyl]amino]pentanoyl]amino]hexanamide (source_name) BDBM50271340 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96GG9 DCUN1D1;DCN1;DCUN1L1;RP42;SCCRO
DCN1-like protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50271340 medium
; target=DCN1-like protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50271340 Open - 10.1021/acs.jmedchem.7b01455; 10.7270/Q2SQ94P1 PMID: 29438612
PubChem CID145960498 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCC(=O)N[C@@H](Cc1ccc2ccccc2c1)C(=O)N[C@H](C(=O)N[C@@H](CCCCN)C(=O)N[C@H]1CCc2ccccc21)[C@@H](C)CC keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB050557/BDB050557.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB050557/BDB050557.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB050557/BDB050557.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB050557/BDB050557.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB050557/BDB050557.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM50271340 IC50 1926 nM Low DOI: 10.7270/Q2SQ94P1 1
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM50271340 IC50 1900 nM Low DOI: 10.1021/acs.jmedchem.7b01455
PMID: 29438612 		1
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM50271340 Ki 380 nM Moderate DOI: 10.1021/acs.jmedchem.7b01455
PMID: 29438612 		1