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propionyl-2Nal-Cha-Lys-NHbenzhydryl

E3L050560
Internal ID: BDB050560
Activity data available Local docking-ready structure
Dock with Q96GG9
Structure
/e3_file/ligand_db/generated/BDB050560/BDB050560.sdf
Basic Properties
Compound ID
E3L050560
Internal ID
BDB050560
Molecular formula
C44H55N5O4
Molecular weight
717.955000
Exact mass
717.425405
XLogP
6.2519
TPSA
142.4200
HBA / HBD
5 / 5
Rotatable bonds
18
Heavy atoms / rings
53 / 5
Activity summary
Ki unknown 44.00000000 nM
3 activity record(s) imported
InChIKey
YGSYJXHGXAMSKA-IGMOWHQGSA-N
SMILES
CCC(=O)N[C@@H](Cc1ccc2ccccc2c1)C(=O)N[C@@H](CC1CCCCC1)C(=O)N[C@@H](CCCCN)C(=O)NC(c1ccccc1)c1ccccc1
Aliases
BDBM50271347 (preferred) propionyl-2Nal-Cha-Lys-NHbenzhydryl (source_name) BDBM50271347 (source_id)
E3 Relation
E3 UniProt Gene / protein Relation type Ligand role Direct Functional Docking Source Evidence
Q96GG9 DCUN1D1;DCN1;DCUN1L1;RP42;SCCRO
DCN1-like protein 1		 reported_binder bindingdb_reported Yes No low BindingDB:BDBM50271347 medium
; target=DCN1-like protein 1
Sources and Literature
Source Source ID Source URL Download URL DOI / PMID
BindingDB BDBM50271347 Open - 10.1021/acs.jmedchem.7b01455; 10.7270/Q2SQ94P1 PMID: 29438612
PubChem CID145961149 Open -
Structure Files
Kind Format Status Docking use File / link Preparation note
canonical_2d SMILES raw Docking-ready CCC(=O)N[C@@H](Cc1ccc2ccccc2c1)C(=O)N[C@@H](CC1CCCCC1)C(=O)N[C@@H](CCCCN)C(=O)NC(c1ccccc1)c1ccccc1 keep_bindingdb_unique
generated_3d SDF prepared Docking-ready public/e3_file/ligand_db/generated/BDB050560/BDB050560.sdf Generated from canonical SMILES
generated_3d MOL2 prepared Docking-ready public/e3_file/ligand_db/generated/BDB050560/BDB050560.mol2 Generated from canonical SMILES
docking_ready PDBQT prepared Docking-ready public/e3_file/ligand_db/generated/BDB050560/BDB050560.pdbqt Generated from canonical SMILES
image PNG prepared Reference public/e3_file/ligand_db/generated/BDB050560/BDB050560.png Generated from canonical SMILES
image SVG prepared Reference public/e3_file/ligand_db/generated/BDB050560/BDB050560.svg Generated from canonical SMILES
Activity
Target Source Assay Result Potency Literature Records
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM50271347 IC50 290 nM Moderate DOI: 10.7270/Q2SQ94P1 1
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM50271347 IC50 368 nM Moderate DOI: 10.1021/acs.jmedchem.7b01455
PMID: 29438612 		1
DCN1-like protein 1
Q96GG9
E3 ligase component 		BindingDB:BDBM50271347 Ki 44 nM High DOI: 10.1021/acs.jmedchem.7b01455
PMID: 29438612 		1